Journal Articles by P. Košovan
                                        
  
  
    
        
            S. P. Pineda
        
            
        
    
        
            P. M. Blanco
        
            
        
    
        
            R. Staňo
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Patchy Charge Distribution Affects the pH in Protein Solutions during Dialysis
    
        
                                
                                    Patchy Charge Distribution Affects the pH in Protein Solutions during Dialysis
        
            Langmuir,
            41(8),
            
            2025
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            D. Beyer
        
            
        
    
        
            P. M. Blanco
        
            
        
    
        
            J. Landsgesell
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            C. Holm
        
        
How To Correct Erroneous Symmetry-Breaking in Coarse-Grained Constant-pH Simulations
    
        
                                
                                    How To Correct Erroneous Symmetry-Breaking in Coarse-Grained Constant-pH Simulations
        
            Journal of Chemical Theory and Computation,
            21(3),
            
            2025
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            P. M. Blanco
        
            
                 
                
            
    
        
            P. Košovan
        
        
The explicit bonding reaction ensemble Monte Carlo method
    
        
                                
                                    The explicit bonding reaction ensemble Monte Carlo method
        
            The Journal of Chemical Physics,
            161(9),
            
            2024
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            D. Beyer
        
            
        
    
        
            P. B. Torres
        
            
        
    
        
            S. P. Pineda
        
            
        
    
        
            C. F. Narambuena
        
            
        
    
        
            J.-N. Grad
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            P. M. Blanco
        
        
pyMBE: The Python-based molecule builder for ESPResSo
    
        
                                
                                    
                                
                                    pyMBE: The Python-based molecule builder for ESPResSo
        
            The Journal of Chemical Physics,
            161(2),
            
            2024
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            R. Staňo
        
            
        
    
        
            J. J. van Lente
        
            
        
    
        
            S. Lindhoud
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Sequestration of Small Ions and Weak Acids and Bases by a Polyelectrolyte Complex Studied by Simulation and Experiment
    
        
                                
                                    Sequestration of Small Ions and Weak Acids and Bases by a Polyelectrolyte Complex Studied by Simulation and Experiment
        
            Macromolecules,
            57(3),
            
            2024
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            D. Beyer
        
            
        
    
        
            J. Landsgesell
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            O. Rud
        
            
        
    
        
            R. Lunkad
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            C. Holm
        
        
Correction to “Grand-Reaction Method for Simulations of Ionization Equilibria Coupled to Ion Partitioning”
    
        
                                
                                    Correction to “Grand-Reaction Method for Simulations of Ionization Equilibria Coupled to Ion Partitioning”
        
            Macromolecules,
            55(3),
            
            2022
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            J. Landsgesell
        
            
        
    
        
            D. Beyer
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            C. Holm
        
        
The pH-Dependent Swelling of Weak Polyelectrolyte Hydrogels Modeled at Different Levels of Resolution
    
        
                                
                                    
                                
                                    
                                
                                    The pH-Dependent Swelling of Weak Polyelectrolyte Hydrogels Modeled at Different Levels of Resolution
        
            Macromolecules,
            55(8),
            
            2022
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            O. V. Rud
        
            
        
    
        
            J. Landsgesell
        
            
        
    
        
            C. Holm
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Modeling of weak polyelectrolyte hydrogels under compression - Implications for water desalination
    
        
                                
                                    Modeling of weak polyelectrolyte hydrogels under compression - Implications for water desalination
        
            Desalination,
            506,
            
            2021
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            R. Staňo
        
            
        
    
        
            P. Košovan
        
            
        
    
        
            A. Tagliabue
        
            
                
                 
                
            
    
        
            C. Holm
        
        
Electrostatically Cross-Linked Reversible Gels—Effects of pH and Ionic Strength
    
        
                                
                                    Electrostatically Cross-Linked Reversible Gels—Effects of pH and Ionic Strength
        
            Macromolecules,
            54,
            
            2021
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            R. Lunkad
        
            
        
    
        
            A. Murmiliuk
        
            
        
    
        
            Z. Tošner
        
            
        
    
        
            M. Štěpánek
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Role of pKA in Charge Regulation and Conformation of Various Peptide Sequences
    
        
                                
                                    Role of pKA in Charge Regulation and Conformation of Various Peptide Sequences
        
            Polymers,
            13(2),
            214,
            2021
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            A. D. Kazakov
        
            
        
    
        
            V. M. Prokacheva
        
            
        
    
        
            F. Uhlík
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            F. A. M. Leermakers
        
        
Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach
Royal Society of Chemistry (RSC), 2021
    
    
    
    
    
                                    
                                
                                    Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach
Royal Society of Chemistry (RSC), 2021
                                        
  
  
    
        
            R. Lunkad
        
            
        
    
        
            A. Murmiliuk
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            M. Boublík
        
            
        
    
        
            Z. Tošner
        
            
        
    
        
            M. Štěpánek
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Quantitative prediction of charge regulation in oligopeptides
Royal Society of Chemistry (RSC), 2021
    
    
    
    
    
                                    
                                
                                    Quantitative prediction of charge regulation in oligopeptides
Royal Society of Chemistry (RSC), 2021
                                        
  
  
    
        
            R. Lunkad
        
            
        
    
        
            A. Murmiliuk
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            M. Boublík
        
            
        
    
        
            Z. Tošner
        
            
        
    
        
            M. Štěpánek
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Quantitative prediction of charge regulation in oligopeptides
    
        
                                
                                    Quantitative prediction of charge regulation in oligopeptides
        
            Molecular Systems Design & Engineering,
            6,
            122-131,
            2020
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            R. Lunkad
        
            
        
    
        
            A. Murmiliuk
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            M. Boublík
        
            
        
    
        
            Z. Tošner
        
            
        
    
        
            M. Štěpánek
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Quantitative prediction of charge regulation in oligopeptides
    
        
                                
                                    Quantitative prediction of charge regulation in oligopeptides
        
            Molecular Systems Design & Engineering,
            6,
            
            2020
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            A. D. Kazakov
        
            
        
    
        
            V. M. Prokacheva
        
            
        
    
        
            F. Uhlík
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            F. A. M. Leermakers
        
        
Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach
    
        
                                
                                    Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach
        
            Soft Matter,
            17,
            580-591,
            2020
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            J. Landsgesell
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            O. Rud
        
            
        
    
        
            R. Lunkad
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            C. Holm
        
        
Grand-Reaction Method for Simulations of Ionization Equilibria Coupled to Ion Partitioning
    
        
                                
                                    Grand-Reaction Method for Simulations of Ionization Equilibria Coupled to Ion Partitioning
        
            Macromolecules,
            53(8),
            
            2020
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            R. Staňo
        
            
        
    
        
            L. Nová
        
            
        
    
        
            F. Uhlík
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Multivalent counterions accumulate in star-like polyelectrolytes and collapse the polymer in spite of increasing its ionization
Royal Society of Chemistry (RSC), 2020
    
    
    
    
    
                                    
                                
                                    Multivalent counterions accumulate in star-like polyelectrolytes and collapse the polymer in spite of increasing its ionization
Royal Society of Chemistry (RSC), 2020
                                        
  
  
    
        
            R. Fernandez-Alvarez
        
            
        
    
        
            L. Nová
        
            
        
    
        
            F. Uhlík
        
            
        
    
        
            S. Kereïche
        
            
        
    
        
            M. Uchman
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            P. Matějíček
        
        
Interactions of star-like polyelectrolyte micelles with hydrophobic counterions
    
        
                                
                                    Interactions of star-like polyelectrolyte micelles with hydrophobic counterions
        
            Journal of Colloid and Interface Science,
            546,
            
            2019
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            J. Landsgesell
        
            
        
    
        
            L. Nová
        
            
        
    
        
            O. Rud
        
            
        
    
        
            F. Uhlík
        
            
        
    
        
            D. Sean
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            C. Holm
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Simulations of ionization equilibria in weak polyelectrolyte solutions and gels
    
        
                                
                                    Simulations of ionization equilibria in weak polyelectrolyte solutions and gels
        
            Soft Matter,
            15(6),
            
            2019
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            J. Landsgesell
        
            
        
    
        
            L. Nová
        
            
        
    
        
            O. Rud
        
            
        
    
        
            F. Uhlík
        
            
        
    
        
            D. Sean
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            C. Holm
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Simulations of ionization equilibria in weak polyelectrolyte solutions and gels
    
        
                                
                                    Simulations of ionization equilibria in weak polyelectrolyte solutions and gels
        
            Soft Matter,
            15(6),
            
            2019
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            J. Landsgesell
        
            
        
    
        
            L. Nová
        
            
        
    
        
            O. Rud
        
            
        
    
        
            F. Uhlík
        
            
        
    
        
            D. Sean
        
            
        
    
        
            P. Hebbeker
        
            
        
    
        
            C. Holm
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Simulations of ionization equilibria in weak polyelectrolyte solutions and gels
    
        
                                
                                    Simulations of ionization equilibria in weak polyelectrolyte solutions and gels
        
            Soft Matter,
            15(6),
            
            2019
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            A. Murmiliuk
        
            
        
    
        
            P. Košovan
        
            
        
    
        
            M. Janata
        
            
        
    
        
            K. Procházka
        
            
        
    
        
            F. Uhlík
        
            
                
                 
                
            
    
        
            M. Štěpánek
        
        
Local pH and Effective pK of a Polyelectrolyte Chain: Two Names for One Quantity?
    
        
                                
                                    Local pH and Effective pK of a Polyelectrolyte Chain: Two Names for One Quantity?
        
            ACS Macro Letters,
            7(10),
            
            2018
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            T. Richter
        
            
        
    
        
            J. Landsgesell
        
            
        
    
        
            P. Košovan
        
            
                
                 
                
            
    
        
            C. Holm
        
        
On the efficiency of a hydrogel-based desalination cycle
    
        
                                
                                    On the efficiency of a hydrogel-based desalination cycle
        
            Desalination,
            414,
            
            2017
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            O. Rud
        
            
        
    
        
            T. Richter
        
            
        
    
        
            O. Borisov
        
            
        
    
        
            C. Holm
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
A self-consistent mean-field model for polyelectrolyte gels
    
        
                                
                                    A self-consistent mean-field model for polyelectrolyte gels
        
            Soft Matter,
            13(18),
            
            2017
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            L. Nová
        
            
        
    
        
            F. Uhlík
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Local pH and effective pK A of weak polyelectrolytes – insights from computer simulations
    
        
                                
                                    Local pH and effective pK A of weak polyelectrolytes – insights from computer simulations
        
            Physical Chemistry Chemical Physics,
            19(22),
            
            2017
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            L. Nová
        
            
        
    
        
            F. Uhlík
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
Local pH and effective pK A of weak polyelectrolytes – insights from computer simulations
    
        
                                
                                    Local pH and effective pK A of weak polyelectrolytes – insights from computer simulations
        
            Physical Chemistry Chemical Physics,
            19(22),
            
            2017
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            O. Rud
        
            
        
    
        
            T. Richter
        
            
        
    
        
            O. Borisov
        
            
        
    
        
            C. Holm
        
            
                
                 
                
            
    
        
            P. Košovan
        
        
A self-consistent mean-field model for polyelectrolyte gels
    
        
                                
                                    A self-consistent mean-field model for polyelectrolyte gels
        
            Soft Matter,
            13(18),
            
            2017
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            P. Košovan
        
            
        
    
        
            T. Richter
        
            
                
                 
                
            
    
        
            C. Holm
        
        
Modeling of Polyelectrolyte Gels in Equilibrium with Salt Solutions
    
        
                                
                                    Modeling of Polyelectrolyte Gels in Equilibrium with Salt Solutions
        
            Macromolecules,
            48(20),
            
            2015
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            F. Uhlík
        
            
        
    
        
            P. Košovan
        
            
        
    
        
            Z. Limpouchová
        
            
        
    
        
            K. Procházka
        
            
        
    
        
            O. V. Borisov
        
            
                
                 
                
            
    
        
            F. A. M. Leermakers
        
        
Modeling of Ionization and Conformations of Starlike Weak Polyelectrolytes
    
        
                                
                                    Modeling of Ionization and Conformations of Starlike Weak Polyelectrolytes
        
            Macromolecules,
            47(12),
            
            2014
        
        
    
    
    
    
    
                                    
                                        
  
  
    
        
            J. Kuldová
        
            
        
    
        
            P. Košovan
        
            
        
    
        
            Z. Limpouchová
        
            
                
                 
                
            
    
        
            K. Procházka
        
        
Computer Study of the Association Behavior of Gradient Copolymers: Analysis of Simulation Results Based on a New Algorithm for Recognition and Classification of Aggregates
    
        
                                
                                    
                                
                            Computer Study of the Association Behavior of Gradient Copolymers: Analysis of Simulation Results Based on a New Algorithm for Recognition and Classification of Aggregates
        
            Macromolecular Theory and Simulations,
            22(1),
            
            2012